Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs144788328 chr9:72957032 A/G 1.81E-5 491 30.8 31.4 22.45 KM Plot
PRAD rs1448119 chr2:107499573 A/G 4.09E-5 494 36.33 31.13 30.8 KM Plot
PRAD rs145016630 chr1:93860794 TCTCA/T 3.54E-6 494 31.37 28.13 18.97 KM Plot
PRAD rs145406591 chr16:88076009 C/T 3.58E-5 484 30.08 32.43 18.2 KM Plot
PRAD rs145451561 chr7:157939328 G/C 0 479 31.27 30.8 12.87 KM Plot
PRAD rs145535536 chr7:43573219 G/GTGGT 8.52E-6 484 31.28 31 14.4 KM Plot
PRAD rs145540145 chr9:72937099 CTATT/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs145606348 chr6:43230103 GGT/G 7.9E-5 486 31.27 27.37 21.57 KM Plot
PRAD rs145607663 chr22:18416830 T/C 4.55E-5 487 29.17 33.07 24 KM Plot
PRAD rs145693428 chr6:7202224 T/TA 0.00013 492 32.4 27.67 26.95 KM Plot
PRAD rs1458023 chr1:243886673 A/G 5.69E-5 494 31.23 28.78 38.63 KM Plot
PRAD rs145850647 chr20:30100625 A/AAAT 1.35E-5 475 29.18 36.63 29.17 KM Plot
PRAD rs146046857 chr12:10718376 T/C 5.82E-5 488 30.8 32.77 19.93 KM Plot
PRAD rs146318439 chr1:243985979 C/G 0.000146 488 31.13 29.02 48.8 KM Plot
PRAD rs146741610 chr4:187811654 A/G 2.56E-6 478 31.13 27.88 26.8 KM Plot